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[ CourseMega.com ] Udemy - Practical Bioinformatics I 2021
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MP4 | Video: h264, 1280x720 | Audio: AAC, 44.1 KHz Language: English | Size: 3.19 GB | Duration: 6h 27m Biological Data Manipulation What you'll learn Sanger sequencing method and working with trace files Common High-throughput sequencing platforms, methods, and applications Common sequence, feature, alignment, and variation files Extract, convert, split, merge, and/or remove sequences, features, alignments, and/or variations Using more than 40 (currently 43) bioinformatics programs in addition to explaining their parameters Using more than 20 (currently 21) bioinformatics programs without explaining their parameters Different ways of using biological data in different researches (more than 30 papers are available) Requirements Internet connection and a web browser. Description Learning many tools and manipulation methods helps you to accurately understand files, their components, and their outputs, thus broadening your horizons in bioinformatics applications in general.
Practical applications will be on nucleic acids
The programs used are popular, free, and online (majority) or software installed on all operating systems
The first part discusses the DNA Sanger Sequencing because of its great importance so far despite the old method, and we will talk in this part about:
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FILE LIST
Filename
Size
~Get Your Files Here !/1. Brief Introduction to Biological Data/1. Brief introduction to DNA, RNA, and Protein.mp4
26.7 MB
~Get Your Files Here !/1. Brief Introduction to Biological Data/1. Brief introduction to DNA, RNA, and Protein.srt
6.3 KB
~Get Your Files Here !/1. Brief Introduction to Biological Data/2. Introduction to the course.html
177 B
~Get Your Files Here !/2. Sanger Sequencing/1. The Sanger Sequencing Method.mp4
9.8 MB
~Get Your Files Here !/2. Sanger Sequencing/1. The Sanger Sequencing Method.srt
2.9 KB
~Get Your Files Here !/2. Sanger Sequencing/1.1 Human Genome Project_ Sequencing the Human Genome _ Learn Science at Scitable.pdf
1.1 MB
~Get Your Files Here !/2. Sanger Sequencing/2. Technical Troubles and Causes.mp4
25.7 MB
~Get Your Files Here !/2. Sanger Sequencing/2. Technical Troubles and Causes.srt
5.9 KB
~Get Your Files Here !/2. Sanger Sequencing/2.1 MAN0014435_Trbleshoot_Sanger_seq_data_UB.pdf
1.9 MB
~Get Your Files Here !/2. Sanger Sequencing/3. Visualize Trace Files using Teal.mp4
58.2 MB
~Get Your Files Here !/2. Sanger Sequencing/3. Visualize Trace Files using Teal.srt
4.7 KB
~Get Your Files Here !/2. Sanger Sequencing/3.1 Tracy.pdf
1.6 MB
~Get Your Files Here !/2. Sanger Sequencing/4. Visualize Trace Files using Teal (2).mp4
52.5 MB
~Get Your Files Here !/2. Sanger Sequencing/4. Visualize Trace Files using Teal (2).srt
3.8 KB
~Get Your Files Here !/2. Sanger Sequencing/5. Edit Trace Files using MEGA.mp4
95.9 MB
~Get Your Files Here !/2. Sanger Sequencing/5. Edit Trace Files using MEGA.srt
5.5 KB
~Get Your Files Here !/2. Sanger Sequencing/5.1 MEGA11.pdf
518.6 KB
~Get Your Files Here !/2. Sanger Sequencing/6. Edit Trace Files using Finch TV.mp4
94.9 MB
~Get Your Files Here !/2. Sanger Sequencing/6. Edit Trace Files using Finch TV.srt
3.9 KB
~Get Your Files Here !/2. Sanger Sequencing/7. Sanger sequencing and trace editor software.html
177 B
~Get Your Files Here !/2. Sanger Sequencing/Udemy Files/1.svg
64.8 KB
~Get Your Files Here !/2. Sanger Sequencing/Udemy Files/2.svg
67.4 KB
~Get Your Files Here !/2. Sanger Sequencing/Udemy Files/3.svg
67.6 KB
~Get Your Files Here !/2. Sanger Sequencing/Udemy Files/3MBP.fasta
3.8 MB
~Get Your Files Here !/2. Sanger Sequencing/Udemy Files/4.svg
68 KB
~Get Your Files Here !/2. Sanger Sequencing/Udemy Files/4Tracks.png
1.1 MB
~Get Your Files Here !/2. Sanger Sequencing/Udemy Files/5reads example.fastq
655 B
~Get Your Files Here !/2. Sanger Sequencing/Udemy Files/5reads example2.fastq
655 B
~Get Your Files Here !/2. Sanger Sequencing/Udemy Files/60Ns.fasta
772 B
~Get Your Files Here !/2. Sanger Sequencing/Udemy Files/6reads example.fastq
786 B
~Get Your Files Here !/2. Sanger Sequencing/Udemy Files/6reads example2.fastq
786 B
~Get Your Files Here !/2. Sanger Sequencing/Udemy Files/ad-bias.2.vcf
2.6 KB
~Get Your Files Here !/2. Sanger Sequencing/Udemy Files/ad-bias.vcf
2.5 KB
~Get Your Files Here !/2. Sanger Sequencing/Udemy Files/adaptors.txt
157 B
~Get Your Files Here !/2. Sanger Sequencing/Udemy Files/bedtools complement - chromosomeSize.txt
52 B
~Get Your Files Here !/2. Sanger Sequencing/Udemy Files/bedtools flank - chromosomeSize.txt
47 B
~Get Your Files Here !/2. Sanger Sequencing/Udemy Files/bedtools SubtractBed A file.bed
28 B
~Get Your Files Here !/2. Sanger Sequencing/Udemy Files/bedtools SubtractBed B file.bed
28 B
~Get Your Files Here !/2. Sanger Sequencing/Udemy Files/clustalo-I20210616-123644-0394-75862866-p2m.clustal_num
12.6 KB
~Get Your Files Here !/2. Sanger Sequencing/Udemy Files/CP058348.gb
8.7 MB
~Get Your Files Here !/2. Sanger Sequencing/Udemy Files/cutadapt_FASTQ.fastq
1.9 KB
~Get Your Files Here !/2. Sanger Sequencing/Udemy Files/cutadapt_f_adaptor.fasta
29 B
~Get Your Files Here !/2. Sanger Sequencing/Udemy Files/cutadapt_f_and_r_adaptor.fasta
56 B
~Get Your Files Here !/2. Sanger Sequencing/Udemy Files/cutadapt_output.fasta
742 B
~Get Your Files Here !/2. Sanger Sequencing/Udemy Files/cutadapt_r_adaptor.fasta
27 B
~Get Your Files Here !/2. Sanger Sequencing/Udemy Files/exons.fasta
665 B
~Get Your Files Here !/2. Sanger Sequencing/Udemy Files/extractfeatoutseq.fasta
26.6 KB
~Get Your Files Here !/2. Sanger Sequencing/Udemy Files/fastq/fastq-illumina.fastq
732 B
~Get Your Files Here !/2. Sanger Sequencing/Udemy Files/fastq/fastq-sanger.fastq
732 B
~Get Your Files Here !/2. Sanger Sequencing/Udemy Files/fastq/fastq-solexa.fastq
732 B
~Get Your Files Here !/2. Sanger Sequencing/Udemy Files/Galaxy5-[Filter_Tabular_on_data_3].bed
26 B
~Get Your Files Here !/2. Sanger Sequencing/Udemy Files/GCF_000146045.2_R64_genomic.gbff
31.3 MB
~Get Your Files Here !/2. Sanger Sequencing/Udemy Files/GCF_000146045.2_R64_genomic_chI,II,III.gbff
3.5 MB
~Get Your Files Here !/2. Sanger Sequencing/Udemy Files/GCF_000146045.2_R64_genomic_chI.gbff
569.8 KB
~Get Your Files Here !/2. Sanger Sequencing/Udemy Files/Genome-Extract_features.fasta
44.7 KB
~Get Your Files Here !/2. Sanger Sequencing/Udemy Files/GFF.gff3
1.7 KB
~Get Your Files Here !/2. Sanger Sequencing/Udemy Files/HBB.ffn
72.6 KB
~Get Your Files Here !/2. Sanger Sequencing/Udemy Files/HBB.gb
155.3 KB
~Get Your Files Here !/2. Sanger Sequencing/Udemy Files/HBBRefSeq.gb
173.8 KB
~Get Your Files Here !/2. Sanger Sequencing/Udemy Files/HBB_refseq_protein.fasta
2.3 KB
~Get Your Files Here !/2. Sanger Sequencing/Udemy Files/HBB_refseq_transcript.fasta
8.2 KB
~Get Your Files Here !/2. Sanger Sequencing/Udemy Files/IDs-seqtksubseq.txt
53 B
~Get Your Files Here !/2. Sanger Sequencing/Udemy Files/index.png
342.3 KB
~Get Your Files Here !/2. Sanger Sequencing/Udemy Files/index.svg
90.3 KB
~Get Your Files Here !/2. Sanger Sequencing/Udemy Files/index2.png
126.5 KB
~Get Your Files Here !/2. Sanger Sequencing/Udemy Files/index2.svg
82.8 KB
~Get Your Files Here !/2. Sanger Sequencing/Udemy Files/manual-BED-seqtksubseq.bed
93 B
~Get Your Files Here !/2. Sanger Sequencing/Udemy Files/merge.bed
61 B
~Get Your Files Here !/2. Sanger Sequencing/Udemy Files/NM_000518.5.fasta
699 B
~Get Your Files Here !/2. Sanger Sequencing/Udemy Files/outfeat.txt
38.8 KB
~Get Your Files Here !/2. Sanger Sequencing/Udemy Files/outseq.fasta
266 B
~Get Your Files Here !/2. Sanger Sequencing/Udemy Files/REF.fasta
10 KB
~Get Your Files Here !/2. Sanger Sequencing/Udemy Files/Remove Adaptors.fasta
278 B
~Get Your Files Here !/2. Sanger Sequencing/Udemy Files/Saccharomyces_cerevisiae.R64-1-1.51.chromosome.I.gff3
97 KB
~Get Your Files Here !/2. Sanger Sequencing/Udemy Files/Saccharomyces_cerevisiae.R64-1-1.51.gff3
5.4 MB
~Get Your Files Here !/2. Sanger Sequencing/Udemy Files/Saccharomyces_cerevisiae.R64-1-1.dna.chromosome.I.fa
228.6 KB
~Get Your Files Here !/2. Sanger Sequencing/Udemy Files/Saccharomyces_cerevisiae.R64-1-1.dna.toplevel.fa
11.8 MB
~Get Your Files Here !/2. Sanger Sequencing/Udemy Files/sample.abi
322.8 KB
~Get Your Files Here !/2. Sanger Sequencing/Udemy Files/Sample.fas
1.4 KB
~Get Your Files Here !/2. Sanger Sequencing/Udemy Files/sample.fastq
2.9 KB
~Get Your Files Here !/2. Sanger Sequencing/Udemy Files/sample.scf
140.6 KB
~Get Your Files Here !/2. Sanger Sequencing/Udemy Files/samtools view - read1.fastq
1.2 KB
~Get Your Files Here !/2. Sanger Sequencing/Udemy Files/samtools view - read2.fastq
1.2 KB
~Get Your Files Here !/2. Sanger Sequencing/Udemy Files/samtools view - regions.bed
10 B
~Get Your Files Here !/2. Sanger Sequencing/Udemy Files/samtools view-read1.fastq
1.2 KB
~Get Your Files Here !/2. Sanger Sequencing/Udemy Files/samtools view-read2.fastq
1.2 KB
~Get Your Files Here !/2. Sanger Sequencing/Udemy Files/samtools view-reference.fasta
1 KB
~Get Your Files Here !/2. Sanger Sequencing/Udemy Files/seqdump.fasta
61.5 KB
~Get Your Files Here !/2. Sanger Sequencing/Udemy Files/seqtksubseq-FASTA.fasta
99.4 KB
~Get Your Files Here !/2. Sanger Sequencing/Udemy Files/Seqtk_subseq_bed.bed
26 B
~Get Your Files Here !/2. Sanger Sequencing/Udemy Files/Seqtk_subseq_ids_list.txt
12 B
~Get Your Files Here !/2. Sanger Sequencing/Udemy Files/Seqtk_subseq_known_seq.fasta
184 B
~Get Your Files Here !/2. Sanger Sequencing/Udemy Files/Seqtk_subseq_sequencing_file.fasta
10 KB
~Get Your Files Here !/2. Sanger Sequencing/Udemy Files/SNPs-seqtk_listhet.fasta
539 B
~Get Your Files Here !/2. Sanger Sequencing/Udemy Files/SNP_K-seqtk_listhet.fasta
540 B
~Get Your Files Here !/2. Sanger Sequencing/Udemy Files/WED.txt
1.4 KB
~Get Your Files Here !/2. Sanger Sequencing/Udemy Files/WED1.txt
1.1 KB
~Get Your Files Here !/2. Sanger Sequencing/Udemy Files/XM_002822127.4.fasta
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